In the heart of China’s Yunnan province, researchers have uncovered new insights into the interaction between a destructive virus and one of the world’s most beloved fruits: the tomato. The study, led by Yu Li of the Biotechnology and Genetic Germplasm Resources Research Institute at the Yunnan Academy of Agricultural Sciences, sheds light on the mechanisms behind the colored lesions caused by the Chilli yellow ringspot orthotospovirus (CYRSV) in tomato fruits. Published in the journal ‘Viruses’, this research could have significant implications for the agriculture sector, particularly in regions where CYRSV poses a substantial threat to tomato crops.
CYRSV is a notorious pathogen that can devastate tomato yields, causing significant economic losses for farmers. The virus induces colored lesions on tomato fruits, rendering them unmarketable. “Understanding the underlying mechanisms of these lesions is crucial for developing effective control strategies,” Li explains. The research team set out to explore the color formation mechanism in CYRSV-infected tomato fruits, using fruits with different-colored lesions as experimental materials.
Through a combination of ultrathin sectioning, transmission electron microscopy, transcriptome, and metabolome analyses, the researchers made several key discoveries. They found that CYRSV infection distorts the structure of chromoplasts—the organelles responsible for pigment accumulation in tomato fruits—and significantly decreases the number of plastoglobules per chromoplast, while increasing the plastoglobule areas.
The metabolome analysis revealed a marked reduction in carotenoid metabolites, such as lycopene and α-carotene, in both red-yellow and yellow tomatoes. Interestingly, the flavonoid metabolites rutin, catechin, and naringenin chalcone were significantly increased in the yellow group only. “This suggests that the color changes in the lesions are not solely due to the degradation of carotenoids but also involve the accumulation of specific flavonoids,” Li notes.
The study also identified several transcription regulators, such as AP2 and MYB12, that play crucial roles in flavonoid and carotenoid biosynthesis in CYRSV-infected tomato fruits. These findings provide new insights into the complex interplay between the virus and the host plant’s metabolic pathways.
The commercial impacts of this research are substantial. By understanding the molecular mechanisms behind CYRSV-induced lesions, researchers can develop targeted strategies to mitigate the virus’s effects on tomato crops. This could include breeding programs aimed at developing CYRSV-resistant tomato varieties or the development of novel biopesticides that interfere with the virus’s ability to manipulate the host’s metabolic pathways.
Moreover, the findings could have broader implications for the agriculture sector, as similar mechanisms may be at play in other plant-virus interactions. “Our results provide a foundation for further research into the molecular basis of virus-induced color changes in fruits,” Li says. “This could lead to the development of more resilient crop varieties and improved pest management strategies.”
As the global population continues to grow, the demand for food is expected to increase significantly. Ensuring the productivity and quality of major crops like tomatoes is therefore of paramount importance. This research represents a significant step forward in our understanding of plant-virus interactions and could pave the way for innovative solutions to some of the most pressing challenges facing the agriculture sector today.

